PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G024600.6.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 437aa    MW: 48375.5 Da    PI: 8.8462
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G024600.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17115164155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.009G024600.6.p 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                           78*******************......55************************997 PP

2AP241.43.6e-13207257155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sobic.009G024600.6.p 207 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 257
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-16115173IPR016177DNA-binding domain
PfamPF008474.8E-9115164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-17116173IPR001471AP2/ERF domain
SMARTSM003803.3E-32116178IPR001471AP2/ERF domain
CDDcd000187.67E-11116174No hitNo description
PROSITE profilePS5103217.794116172IPR001471AP2/ERF domain
CDDcd000184.82E-25207267No hitNo description
SuperFamilySSF541716.54E-17207266IPR016177DNA-binding domain
PfamPF008471.1E-8207257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-16208265IPR001471AP2/ERF domain
SMARTSM003801.8E-32208271IPR001471AP2/ERF domain
PROSITE profilePS5103215.527208265IPR001471AP2/ERF domain
PRINTSPR003674.3E-6209220IPR001471AP2/ERF domain
PRINTSPR003674.3E-6247267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG  60
FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP QPAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM  180
KQMKSLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS  240
EVEAARAYDK AAIKCNGREA VTNFEPSTYD GELLTEVSTE VAEVDLNLSI SQPASQSPKR  300
DKSCLGLQLH HGSFEGSESK KTKIDTPSEL SGHPHRFPLM TEHPPAWPAQ SHPFFTNHES  360
TSSRDLNRRP EGGAPSWAWK VTAAPPHTLP LPLFSSSSSS AAASSGFSNT ATTAAPSASL  420
RFDAPPSSSS SHHHRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52570.0embryo| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G024600.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303263.10.0floral homeotic protein APETALA 2 isoform X4
SwissprotB8AXC31e-170AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1Z5R0M70.0A0A1Z5R0M7_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7