PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G163700.1.p
Common NameSb08g021000, SORBIDRAFT_08g021000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 476aa    MW: 50384.7 Da    PI: 5.1033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G163700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17292338455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Sobic.008G163700.1.p 292 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 338
                           6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.80E-19285342No hitNo description
Gene3DG3DSA:4.10.280.104.0E-21285346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-21286347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14292338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRCSHSLTER QPAMNQYISD WSGAMGDTFA LPLGLGGGGG GGEDDDGLIE LMWCNGHVVM  60
QSQAAPRSNK PPRPDKAAPA AAAVQEDDDA AAQAWFQEQY PVEEEDPLER DDLFSELFGE  120
AQAAVDGARG ACSCKEEAEE DARQSISGMM PPPPPMRPRD DKACTGDASL DAATATEGAE  180
SSMLTIGSSF CGSNHVQTTT GGAGTDVVVV VARARGAATD TSSATRSRSC TTRNEHPCPG  240
AAAAAAAAHR SGKRKQSVDA TDAEDVEFES ADVTCEPAHK TATAKRRRAA EVHNLSERRR  300
RDRINEKMKA LQELIPHCNK TDKASMLDEA IEYLKSLQLQ LQMMWMGGGM AAAAAPVVFP  360
AGVHQYMQRM VAAGPAPPPH MASMPAMPFM APPPAVQAPP LPDLYARYLA VDHHLPPLPP  420
MVASPYTSAM GFYQRQNPAL PPLPAVPAPA PSPSDGILHK KYENCGKPEI QGITG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285300RRRAAEVHNLSERRRR
2296301ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442504.10.0hypothetical protein SORBIDRAFT_08g021000
TrEMBLC5YRJ60.0C5YRJ6_SORBI; Putative uncharacterized protein Sb08g021000
STRINGSb08g021000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-23phytochrome interacting factor 3