PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G157100.2.p
Common NameSb08g020600, SORBIDRAFT_08g020600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 318aa    MW: 33892.6 Da    PI: 4.8301
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G157100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.71.6e-15125178457
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                            k+ rr+ +NRe+ArrsR+RK+a +  Le  v  L++eN +L k+l  ++++++
  Sobic.008G157100.2.p 125 AKKMRRMLSNRESARRSRKRKQAHLNDLESQVSRLTSENASLLKRLADMTQKYK 178
                           6999***********************************999966665555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-16122186IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.53124176IPR004827Basic-leucine zipper domain
PfamPF001709.4E-13125178IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-13126178No hitNo description
SuperFamilySSF579593.21E-12126177No hitNo description
CDDcd147023.53E-20127177No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
PfamPF124984.9E-26193298IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAGGGADDDD VVEVSCGGRG GGDPGAYAAV LKRKLDLYCA AVAKSMEAKS QESSLGYPNS  60
QASDTSQLIS QASFDGDIDG AGLVTNSNVI IEDDDFQGKP TNSGTSKELS DDDGDLEENT  120
DPTNAKKMRR MLSNRESARR SRKRKQAHLN DLESQVSRLT SENASLLKRL ADMTQKYKDA  180
SLDNKNLTVD IETMRRKVNI AEEAVRRLTG TTLMLSTAFD KPMSSTPLSS CASDAASASV  240
AIEDSAKHFL HAPLQSGQMK LDILNAAIPL TSEGIGTKPA SLQRVASLEN LQKRIIGDSM  300
HSETASTFSE PEALADR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RRSRKRK
2138145RRSRKRKQ
3140145SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.130680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G157100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421030.0BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBankKJ7275040.0KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442478.10.0light-inducible protein CPRF2 isoform X2
TrEMBLC5YRE40.0C5YRE4_SORBI; Uncharacterized protein
STRINGSb08g020600.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-31bZIP family protein