PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G028800.1.p
Common NameSb08g002540, SORBIDRAFT_08g002540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 236aa    MW: 26587.7 Da    PI: 4.8967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G028800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.11.7e-081061522159
                           -EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS
                  WRKY  21 prsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 
                            rsYYrC+ +   gC ++k v+++++d++     ++++ Y g+H ++
  Sobic.008G028800.1.p 106 RRSYYRCANSkdqGCLATKTVQQKESDGSagtvrLFDVDYYGQHICK 152
                           69*****9988889***********9986222226889999999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-980152IPR003657WRKY domain
SMARTSM007741.4E-7100153IPR003657WRKY domain
SuperFamilySSF1182901.09E-7104153IPR003657WRKY domain
PfamPF031064.6E-10104152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSILESSTVG GCQVVINEIE HQRALMRELH DLILPLLDPC SRQEKLAQQL FQDISNSSSK  60
VISFLKLGDN SKKQANLIKY RRKGGKNNEV DSHMLGEEAK EIGNRRRSYY RCANSKDQGC  120
LATKTVQQKE SDGSAGTVRL FDVDYYGQHI CKTDDIIHPY VVETTHYTAP IANHNESSSG  180
STVVHNDVHE IQDESFGNLF MMPSIEEYWT DFTDTEMAGT LDEVTSLMIF EDIWS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441801.11e-178hypothetical protein SORBIDRAFT_08g002540
TrEMBLC5YRA41e-178C5YRA4_SORBI; Putative uncharacterized protein Sb08g002540
STRINGSb08g002540.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1240236
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.12e-09WRKY DNA-binding protein 62