PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G001700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Dof
Protein Properties Length: 355aa    MW: 38038 Da    PI: 9.1767
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G001700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.21.8e-3858116462
                zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           +al+cprC+s+ntkfCyynny++ qPryfCk+CrryWt+GG+lrnvPvGgg+rknk++s
  Sobic.008G001700.1.p  58 EALRCPRCNSNNTKFCYYNNYNTMQPRYFCKGCRRYWTHGGTLRNVPVGGGCRKNKRAS 116
                           7899****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-2754113IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3259114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.12460114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDMSSSTTAA ASAPHNHQQE AMVSSPNIKE EARSPKQAEA TQQPSGSGER KPRPQLAEAL  60
RCPRCNSNNT KFCYYNNYNT MQPRYFCKGC RRYWTHGGTL RNVPVGGGCR KNKRASRSVS  120
GSGSSSSSAA YAPLSPDTNT SSSKMSINTQ PMMVPNMMMP TPTMTGLFPN VLPTLMSTGG  180
GSHFNFTMDN QHASMPFTPM PLSNQASVPM LAAGGSGTMP SFLEMLRRGL LHGSSSYDAG  240
LVMSGGNNEM DMSFPLPAYG AMHGHGLSGS TTDDARQLVG TQQGMNTDSG FAGSTRVQEE  300
EEEKGDNKAM VKSSNNNNGG SLLDRYWTKP NNNNNNNNNN NNNNNNNNNK GQQG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Seed endosperm. {ECO:0000269|PubMed:9207153}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G001700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5400870.0HQ540087.1 Sorghum bicolor clone SbDof24 Dof-type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302218.10.0dof zinc finger protein PBF
SwissprotO244631e-151PBF_MAIZE; Dof zinc finger protein PBF
TrEMBLC5YPQ70.0C5YPQ7_SORBI; Uncharacterized protein
STRINGSb05g000310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-33Dof family protein
Publications ? help Back to Top
  1. Lang Z, et al.
    Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.
    J. Hered., 2014 Jul-Aug. 105(4): p. 576-582
    [PMID:24683184]
  2. Zhang Z,Zheng X,Yang J,Messing J,Wu Y
    Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7
    [PMID:27621432]