PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G142700.1.p
Common NameSb07g021800, SORBIDRAFT_07g021800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 441aa    MW: 47997.9 Da    PI: 5.6801
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G142700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-1251106255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV++++++gr++A+++d  +  ng ++k+   g ++ +e Aa+a++ a++k++g
  Sobic.007G142700.1.p  51 AYRGVTRHRWTGRFEAHLWDK-DarNGsRNKKGKQGAYDDEEAAARAHDLAALKYWG 106
                           69******************5.456779775555599******************98 PP

2AP247.35.1e-15149200155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a++ a+ + +g
  Sobic.007G142700.1.p 149 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAVAYDIAAIEHRG 200
                           89****99**********988422...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1450115IPR016177DNA-binding domain
SMARTSM003804.2E-1751120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-1251114IPR001471AP2/ERF domain
PROSITE profilePS5103218.45251114IPR001471AP2/ERF domain
PfamPF008474.2E-951106IPR001471AP2/ERF domain
PRINTSPR003672.1E-55263IPR001471AP2/ERF domain
CDDcd000189.85E-23149210No hitNo description
PfamPF008472.0E-9149199IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-17149210IPR016177DNA-binding domain
SMARTSM003801.3E-26150214IPR001471AP2/ERF domain
PROSITE profilePS5103217.767150208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-18150208IPR001471AP2/ERF domain
PRINTSPR003672.1E-5190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MARPRKNAGT DEDNPNAATG VSVTGKPPKL KRVRRKGEPR ESSTPSQRSS AYRGVTRHRW  60
TGRFEAHLWD KDARNGSRNK KGKQGAYDDE EAAARAHDLA ALKYWGPATV LNFPLCGYDE  120
ELREMEAQPR EEYIGSLRRR SSGFSRGVSK YRGVARHHHN GRWEARIGRV LGNKYLYLGT  180
FATQEEAAVA YDIAAIEHRG LNAVTNFDIS HYVNHWHRHC HGPSDDSLGV VVDDVAAFQL  240
PDDLPECPAA AIGVEETTGG DAEFHNGEEG YLQHHTSGPF GAQQQLPDET GALAAHQMAP  300
NSSALDMVLQ SPKFKELMEQ VSAAAAAVAS ESSIGGSMSS SSPSPSLSSF SPSPLQLPSP  360
SSLSSFSPSS PLQQPSPPLQ QPEFVEGAPA ARCSFPDDVQ TFFDFENESD MSFMYAEVDT  420
FLFGDLGAYA APIFHFDLDV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698470.0BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282110.0KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444429.10.0hypothetical protein SORBIDRAFT_07g021800
TrEMBLC5YLM90.0C5YLM9_SORBI; Putative uncharacterized protein Sb07g021800
STRINGSb07g021800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-67ARIA-interacting double AP2 domain protein