PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G135700.1.p
Common NameSb07g021140, SORBIDRAFT_07g021140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 258aa    MW: 27475 Da    PI: 6.6742
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G135700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.46.2e-3579216389
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 
                            ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l++                      ++ss+
  Sobic.007G135700.1.p  79 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAaepavalvsggpptvvkgrgeGNSSS 167
                           689************************************************************99999999999988888888655555 PP

                   TCP  71 seceaesssssasnsssg..............................k 89 
                           + c +++s+++a ++  +                               
  Sobic.007G135700.1.p 168 TCCLTVDSREEATEKARSrggggggtggpdgppalmeehgrgelgwimT 216
                           4444444444444332223445555555555555555444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.98580138IPR017887Transcription factor TCP subgroup
PfamPF036342.8E-3280143IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPSTAMSWDG YGGQIFPADM SSFHHQDTLE AVFRQPETTA PLQAPAAAGE MELLLRNGSP  60
VPVVDAGVHA AAAPRKRPFR TDRHSKIRTA QGVRDRRMRL SVGVAREFFA LQDRLGFDKA  120
SKTVNWLLTQ SKPAIDRLVD AAEPAVALVS GGPPTVVKGR GEGNSSSTCC LTVDSREEAT  180
EKARSRGGGG GGTGGPDGPP ALMEEHGRGE LGWIMTEATA AAAAATAQPQ QMDGLEYYYQ  240
YCLQLEEMMR CNGGMPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1485138154Putative transcription factor PCF6
5zkt_B2e-1485138154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G135700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614981e-166EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277621e-166KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444387.10.0transcription factor TEOSINTE BRANCHED 1
TrEMBLC5YL710.0C5YL71_SORBI; Uncharacterized protein
STRINGSb07g021140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.15e-28TCP family protein