PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G076800.2.p
Common NameSb07g006170, SORBIDRAFT_07g006170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 231aa    MW: 26324.1 Da    PI: 9.865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G076800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16132222199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k +t+s+v+   +l lp  f+++h  +k ++ t+tl de+  + +  +   kk+    l++GW++F+ +++L +gD +vF+l++r++
  Sobic.007G076800.2.p 132 FIKPMTQSHVTGGFWLGLPTGFCRKHL-PK-RDETITLVDEDDVESNTLYLAMKKG----LSGGWRGFAIQHKLVDGDCLVFQLIERTK 214
                           89************************5.33.5669********8888888555555....9************************9888 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.007G076800.2.p 215 F--KVYIIRA 222
                           8..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-21124223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24125223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-27130221No hitNo description
PfamPF023621.5E-14132222IPR003340B3 DNA binding domain
SMARTSM010193.0E-19132223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAEATAYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAAA AKPSPVKKRK ARVPLDAADA  60
VMQPLRRSGR VANLPDKPAY REEVPAFARR IRRTYGRKDL ANRVYATDEA RSYTISKAED  120
LEQELDSRFP LFIKPMTQSH VTGGFWLGLP TGFCRKHLPK RDETITLVDE DDVESNTLYL  180
AMKKGLSGGW RGFAIQHKLV DGDCLVFQLI ERTKFKVYII RASSYYENED *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G076800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656020.0BT065602.1 Zea mays full-length cDNA clone ZM_BFb0334P07 mRNA, complete cds.
GenBankJX4285140.0JX428514.1 Zea mays subsp. mays clone pUT3113 ABI51 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445218.11e-171B3 domain-containing protein Os06g0194400
RefseqXP_021320220.11e-171B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-119Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1Z5R8I71e-169A0A1Z5R8I7_SORBI; Uncharacterized protein
STRINGSb07g006170.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]