PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G062200.1.p
Common NameSb07g004980, SORBIDRAFT_07g004980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 428aa    MW: 44437 Da    PI: 7.5475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G062200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-053183551254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Sobic.007G062200.1.p 318 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 355
                           677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-5316359No hitNo description
Gene3DG3DSA:4.10.280.109.5E-9316373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11316374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MADHQEMIHP PAAATTGSTG HGHGGDWWTT AVSCSPDQLS AGFGAAGWSS AEGNNKSRSG  60
NAAASSESPG SNHSLATGGS SITFQDNAGA VADHGVVAVP SHPAVSGGLT ASCWNQPSYY  120
LDGSVAGNFH GYMSPRSDQA HHVGLRSPSS NHNNSLMLQD AHDPNQQFLS NLGLELLSSP  180
TSSSGGFRTS SLLRSLTEPS AAAAKTSSPG FMQQYHQQQT MNQVPAGSIR EALQFSNSTP  240
FWNPSAGSFA SAAEGATSLL PPSGKSRPAN FGVKSALDEG AGDSSNIIAK RTNTAPTPPP  300
LKKSRTGTPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHETIE YIKFLHEQVG  360
SLSAPYLKNR QQVPHHKVLR DGGEAAAANG ELTGRGLCLV PISSTFAVAS ETPLDFWTPF  420
GGPAAFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G062200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612831e-116BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320234.10.0transcription factor bHLH112
TrEMBLA0A1B6PFX40.0A0A1B6PFX4_SORBI; Uncharacterized protein
STRINGSb07g004980.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1296544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-44bHLH family protein