PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G228300.1.p
Common NameSb06g029680, SORBIDRAFT_06g029680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 455aa    MW: 47755.2 Da    PI: 6.7222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G228300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313433751754
                           HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++   L++l+ +      +K + a++L +++eYIk L
  Sobic.006G228300.1.p 343 GDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 375
                           55666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-4336379No hitNo description
SuperFamilySSF474592.75E-10336393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-7336384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYNGVGA GAAAPHGGWW NTTAVPATTC STELAGFTTW SSALAASYDL  60
AAEGGKAKCA ATTASSESPG NNSSVTFQEP ASVTDPAGVG TAVVQQPLAG YTDWTHPYMS  120
SGATTLHGFL QDGHQQDMSS TTEQSAMTAS SLMNPSSNNL ALALQGHHHQ EQDHQQQMLS  180
SFGSELLLSP TSPYGFQSSL LRSLMEPTAT AAAKPQALPG YQQYDQYQQM GMGQARFPPA  240
GATREALQFT NDAPFWNPSA AGFGVAPAPA PDQASSVRSV KPSPTAARTT ATLALKTALE  300
GVGESASSII TKKKANGEPA FKKSRLETPS PLPTFKVRKE KLGDRVTALQ QLVAPFGKTD  360
TASVLHETIE YIKFLHDQVG VLSAPYLKNN GHHQVPHLKS SSPDKSNKDD NSHAGEVSLK  420
GRGLCLVPIS STFAVASEVP VDFVWSTPFA ANFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.201110.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G228300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751930.0EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447167.10.0transcription factor bHLH112
TrEMBLC5YGN20.0C5YGN2_SORBI; Uncharacterized protein
STRINGSb06g029680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1484144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.16e-42bHLH family protein