PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G217500.2.p
Common NameSb06g028730, SORBIDRAFT_06g028730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 229aa    MW: 25681.5 Da    PI: 9.4244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G217500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-16129220199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ +++s+v++  +l lp  f+++h  k+ e++tl++ de+g + +  +   kk  +  l++GWkeF+ +++L +gD +vF+l+++++
  Sobic.006G217500.2.p 129 FIQPMIQSHVTRGFWLGLPTYFCRKHLPKSDETITLVV-DEEGDESDTLYL-AKKA-G--LSTGWKEFAIEHKLHDGDCLVFQLIEQTK 212
                           8899**********************444445556665.566666565552.3333.3..9***********************98777 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.006G217500.2.p 213 F--KVYIIRA 220
                           7..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-21123221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-20124221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-23127219No hitNo description
PROSITE profilePS5086311.321129221IPR003340B3 DNA binding domain
SMARTSM010198.3E-17129221IPR003340B3 DNA binding domain
PfamPF023625.2E-14129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAEAVAVAVA VAYEAQRQRQ VEANKRKLDE LQLHRLSAAV REAAAAAKPS PAKKWKARVP  60
RDGAAAGVEP LRRSGRLADL PEKPVYYQVR VKKLLKYNAR VPLDAAERSY AISKAEELVQ  120
DLGSSFPIFI QPMIQSHVTR GFWLGLPTYF CRKHLPKSDE TITLVVDEEG DESDTLYLAK  180
KAGLSTGWKE FAIEHKLHDG DCLVFQLIEQ TKFKVYIIRA TSYFESEH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G217500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417821e-145BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
GenBankBT0617451e-145BT061745.2 Zea mays full-length cDNA clone ZM_BFb0179F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448540.11e-168B3 domain-containing protein Os06g0194400
SwissprotQ69V364e-87Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1Z5RF031e-166A0A1Z5RF03_SORBI; Uncharacterized protein
STRINGSb06g028730.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]