PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G059800.1.p
Common NameSb06g014800, SORBIDRAFT_06g014800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 287aa    MW: 29658.7 Da    PI: 4.2561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G059800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184192156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Sobic.006G059800.1.p 41 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 92
                          5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-2841100No hitNo description
PROSITE profilePS5103221.5624299IPR001471AP2/ERF domain
SMARTSM003803.1E-3242105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-284299IPR001471AP2/ERF domain
PfamPF008471.0E-104291IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-214299IPR016177DNA-binding domain
PRINTSPR003671.6E-84354IPR001471AP2/ERF domain
PRINTSPR003671.6E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSEKKSS SSSSKQRRQQ QQQAQPDANT TRYLGVRRRP WGRYAAEIRD  60
PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY PDLPPGSSIT PYLSPDLTSG  120
DNATQLLQPF YAADPAAASS LQAAAAAPPA ANAGAGYGYG AGAGDDYYAS AYGYNDYSAE  180
DMSALMDDLA IPDDLTAEDA GGSVDMYSGG GGGGSGSANA SSGSGGGGWC DASEFSAYGG  240
ASSAASHGVY FEEGYVHSPL FSPMPAVDDA CADGFQLGGS SSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-184398662ATERF1
3gcc_A4e-184398662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G059800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282751e-164KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446365.10.0ethylene-responsive transcription factor LEP
TrEMBLC5YFB10.0C5YFB1_SORBI; Uncharacterized protein
STRINGSb06g014800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-24ERF family protein