PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G050900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 195aa    MW: 21023.3 Da    PI: 9.8034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G050900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.3e-1481171498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                           +l +s+v++  ++v+p++ a       + + t+   +++grsWe+++  +++++   l++GW++F+ +ngL  gD +vF+l  g+ ++ 
  Sobic.006G050900.1.p  81 ILCKSHVNQPFQVVVPRSLAPFLPAT-TVPATV---TRHGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLMLGDGCVFELLdGKpEGV 163
                           67789999999999999999555322.233334...48*********..9999999************************652666666 PP

                           ..EEEEE- CS
                    B3  91 elvvkvfr 98 
                            ++v+v+r
  Sobic.006G050900.1.p 164 VFRVQVLR 171
                           66666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-1675176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1575172IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-1476171No hitNo description
PROSITE profilePS5086312.18278173IPR003340B3 DNA binding domain
PfamPF023627.4E-1279169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDGWFFLLSS VLTHQSSKSL RRPSRKVVMS KGKSVAMSSA GHSAGASPTD GGADPLSMSE  60
TPCAMQPGVL PLLGRPYFTC ILCKSHVNQP FQVVVPRSLA PFLPATTVPA TVTRHGRSWE  120
MRFTGGRQIQ RLEAGWRGFA LDNGLMLGDG CVFELLDGKP EGVVFRVQVL RAHIPEEIRE  180
RAGGYTSSTP ILID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G050900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9541641e-173EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319641.11e-141B3 domain-containing protein Os04g0386900
SwissprotQ7XLP49e-64Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A1B6PKA31e-140A0A1B6PKA3_SORBI; Uncharacterized protein
STRINGGRMZM2G126194_P012e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Representative plantOGRP7665916
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]