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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G230500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 488aa MW: 54500.2 Da PI: 5.7606 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 165.3 | 5.1e-51 | 154 | 414 | 10 | 280 |
GRAS 10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +av+ +d++ a lL++++++as +gd+ qRla++f+++L+arla+++ +l k+l +++ + + l+a++lf ++ ++k++ Sobic.005G230500.2.p 154 QAVAMNDHTVAVGLLKQIKQHASATGDAAQRLAHCFAKGLEARLAGTGMQLWKSLMAEHPI---VMDFLKAYSLFMAACCFHKIALKFS 239 68999***********************************************999999888...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +I +a+ g++ +Hi+D++ L+++La+R+ gpp++ iT++++ ++ ++++ee g rL+k A+e+g+pf+f+v ++k+ Sobic.005G230500.2.p 240 IMTIEDAMVGKSSLHIVDYG---------LIRSLANRNVGPPQVTITAISHFQPRiyPAQQIEEQGCRLSKCAKEFGLPFKFHV-ITKK 318 ******************96.........9*********************999999**************************9.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +ed+ +e+L+ +++E+l+Vn l+ +l+d sv + +rd+vL+ +++++P +++ + + + ++sFl rf e l y+alfd+ + Sobic.005G230500.2.p 319 WEDVFIEDLNKDTDEVLIVNDLLNFSSLMDVSVFFDAsnPRDTVLSNIRRMRPCIFIQSIVNRSS-GTSFLSRFRELLFNYMALFDMSD 406 ******************************9986554449**************99877766555.789******************** PP GRAS 273 aklprese 280 a++pr+se Sobic.005G230500.2.p 407 ATMPRNSE 414 *****986 PP | |||||||
2 | GRAS | 27.7 | 3.3e-09 | 420 | 486 | 305 | 371 |
GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++r e++++W+ r ++aG++++ l+ ++ k k ++k + + + + e+s++l++gWk+r L++ S Sobic.005G230500.2.p 420 LVNRPEKYMQWQVRNQRAGLRQLLLKPSIIKALKDEVKKEYHKDFFLTEDSQWLLQGWKGRVLFAHS 486 5789***********************************99888********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.527 | 119 | 469 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-48 | 154 | 414 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-6 | 420 | 486 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MAITPEEFFA VDLMEMEPSP PSPSINLPLM PDGGGQGPLS DDDLVLTYIS GLLMEEDIDD 60 KLLGQYSDHP ALLQAQQSYA QLLSSPSFNA NSDNTFNSGN MEGAKNSLQG CSGDQYTLSS 120 SFSKGVDEEG QFSKGLEEAH RFLSGDNSFG KGEQAVAMND HTVAVGLLKQ IKQHASATGD 180 AAQRLAHCFA KGLEARLAGT GMQLWKSLMA EHPIVMDFLK AYSLFMAACC FHKIALKFSI 240 MTIEDAMVGK SSLHIVDYGL IRSLANRNVG PPQVTITAIS HFQPRIYPAQ QIEEQGCRLS 300 KCAKEFGLPF KFHVITKKWE DVFIEDLNKD TDEVLIVNDL LNFSSLMDVS VFFDASNPRD 360 TVLSNIRRMR PCIFIQSIVN RSSGTSFLSR FRELLFNYMA LFDMSDATMP RNSEFHGVDL 420 VNRPEKYMQW QVRNQRAGLR QLLLKPSIIK ALKDEVKKEY HKDFFLTEDS QWLLQGWKGR 480 VLFAHST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-13 | 156 | 413 | 14 | 277 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450072.1 | 0.0 | hypothetical protein SORBIDRAFT_05g027790 | ||||
TrEMBL | C5Y1S6 | 0.0 | C5Y1S6_SORBI; Putative uncharacterized protein Sb05g027790 | ||||
STRING | Sb05g027790.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 4e-85 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G230500.2.p |