PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G230500.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRAS

Protein Properties

Length: 488aa MW: 54500.2 Da PI: 5.7606

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G230500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	165.3	5.1e-51	154	414	10	280
GRAS 10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +av+ +d++ a lL++++++as +gd+ qRla++f+++L+arla+++ +l k+l +++ + + l+a++lf ++ ++k++ Sobic.005G230500.2.p 154 QAVAMNDHTVAVGLLKQIKQHASATGDAAQRLAHCFAKGLEARLAGTGMQLWKSLMAEHPI---VMDFLKAYSLFMAACCFHKIALKFS 239 68999*********************************************999999888...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +I +a+ g++ +Hi+D++ L+++La+R+ gpp++ iT++++ ++ ++++ee g rL+k A+e+g+pf+f+v ++k+ Sobic.005G230500.2.p 240 IMTIEDAMVGKSSLHIVDYG---------LIRSLANRNVGPPQVTITAISHFQPRiyPAQQIEEQGCRLSKCAKEFGLPFKFHV-ITKK 318 **************96.........9*****************999999**********************9.7* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +ed+ +e+L+ +++E+l+Vn l+ +l+d sv + +rd+vL+ +++++P +++ + + + ++sFl rf e l y+alfd+ + Sobic.005G230500.2.p 319 WEDVFIEDLNKDTDEVLIVNDLLNFSSLMDVSVFFDAsnPRDTVLSNIRRMRPCIFIQSIVNRSS-GTSFLSRFRELLFNYMALFDMSD 406 ****************************9986554449**********99877766555.789**************** PP GRAS 273 aklprese 280 a++pr+se Sobic.005G230500.2.p 407 ATMPRNSE 414 ***986 PP
2	GRAS	27.7	3.3e-09	420	486	305	371
GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++r e++++W+ r ++aG++++ l+ ++ k k ++k + + + + e+s++l++gWk+r L++ S Sobic.005G230500.2.p 420 LVNRPEKYMQWQVRNQRAGLRQLLLKPSIIKALKDEVKKEYHKDFFLTEDSQWLLQGWKGRVLFAHS 486 5789*********************************99888******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.527	119	469	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-48	154	414	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-6	420	486	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAITPEEFFA VDLMEMEPSP PSPSINLPLM PDGGGQGPLS DDDLVLTYIS GLLMEEDIDD 60 KLLGQYSDHP ALLQAQQSYA QLLSSPSFNA NSDNTFNSGN MEGAKNSLQG CSGDQYTLSS 120 SFSKGVDEEG QFSKGLEEAH RFLSGDNSFG KGEQAVAMND HTVAVGLLKQ IKQHASATGD 180 AAQRLAHCFA KGLEARLAGT GMQLWKSLMA EHPIVMDFLK AYSLFMAACC FHKIALKFSI 240 MTIEDAMVGK SSLHIVDYGL IRSLANRNVG PPQVTITAIS HFQPRIYPAQ QIEEQGCRLS 300 KCAKEFGLPF KFHVITKKWE DVFIEDLNKD TDEVLIVNDL LNFSSLMDVS VFFDASNPRD 360 TVLSNIRRMR PCIFIQSIVN RSSGTSFLSR FRELLFNYMA LFDMSDATMP RNSEFHGVDL 420 VNRPEKYMQW QVRNQRAGLR QLLLKPSIIK ALKDEVKKEY HKDFFLTEDS QWLLQGWKGR 480 VLFAHST*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAITPEEFFA VDLMEMEPSP PSPSINLPLM PDGGGQGPLS DDDLVLTYIS GLLMEEDIDD  60
KLLGQYSDHP ALLQAQQSYA QLLSSPSFNA NSDNTFNSGN MEGAKNSLQG CSGDQYTLSS  120
SFSKGVDEEG QFSKGLEEAH RFLSGDNSFG KGEQAVAMND HTVAVGLLKQ IKQHASATGD  180
AAQRLAHCFA KGLEARLAGT GMQLWKSLMA EHPIVMDFLK AYSLFMAACC FHKIALKFSI  240
MTIEDAMVGK SSLHIVDYGL IRSLANRNVG PPQVTITAIS HFQPRIYPAQ QIEEQGCRLS  300
KCAKEFGLPF KFHVITKKWE DVFIEDLNKD TDEVLIVNDL LNFSSLMDVS VFFDASNPRD  360
TVLSNIRRMR PCIFIQSIVN RSSGTSFLSR FRELLFNYMA LFDMSDATMP RNSEFHGVDL  420
VNRPEKYMQW QVRNQRAGLR QLLLKPSIIK ALKDEVKKEY HKDFFLTEDS QWLLQGWKGR  480
VLFAHST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-13	156	413	14	277	GRAS family transcription factor containing p
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450072.1	0.0	hypothetical protein SORBIDRAFT_05g027790
TrEMBL	C5Y1S6	0.0	C5Y1S6_SORBI; Putative uncharacterized protein Sb05g027790
STRING	Sb05g027790.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	4e-85	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G230500.2.p