PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G180400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19830.9 Da    PI: 9.5015
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G180400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.4e-121150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+s r  t+ +  + + KKA+EL +LC+++ +v+++++
  Sobic.005G180400.1.p 11 ISNDSTRRATYKRCSESLEKKASELTTLCGIKLCVVVYGQ 50
                          9*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.736150IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-10160IPR002100Transcription factor, MADS-box
CDDcd002661.08E-19262No hitNo description
SuperFamilySSF554555.62E-17392IPR002100Transcription factor, MADS-box
PfamPF003199.0E-121150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MARKKVNLQW ISNDSTRRAT YKRCSESLEK KASELTTLCG IKLCVVVYGQ GEAQPKVWPS  60
NEEAKDLLMK FNRRLDVSSL KKTKNQEEFL QSRSLKLHEQ HETLDLLHDS MVGGRPGFIG  120
TDKGELLSLK DMVDMKMRKI EARLQQLAVG EEVLPQPLPQ DSYNLGACSR LPSAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G180400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317822.11e-91agamous-like MADS-box protein AGL80
TrEMBLA0A1Z5RK891e-126A0A1Z5RK89_SORBI; Uncharacterized protein
STRINGSb05g023915.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-20M-type_MADS family protein