PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G180300.1.p
Common NameSb05g023915, SORBIDRAFT_05g023915
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 169aa    MW: 18856.9 Da    PI: 9.2651
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G180300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.86.7e-0911332042
                          HHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF 20 ilKKAeELSvLCdaevaviifss 42
                          + KKA+EL +LC+++ +v+++++
  Sobic.005G180300.1.p 11 LEKKASELTTLCGIKLCVVVYGQ 33
                          66*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.5E-7833IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-10975IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAHKKRCSKS LEKKASELTT LCGIKLCVVV YGQGEAQPKV WPSNEEAKDL LMKFNRRLDV  60
SSLKKTKNQE EFLQSRSLKL HEQVSKLDLE NREHVTLDVL HDSMVGGRPG LVGSNKGELL  120
SLRDMVDMKM RKIEARLQQL AVGEEVLPQP LPQDSYNLGA CSMLPSAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G180300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317822.13e-83agamous-like MADS-box protein AGL80
TrEMBLA0A1B6PTA11e-119A0A1B6PTA1_SORBI; Uncharacterized protein
STRINGSb05g023915.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-15AGAMOUS-like 38