PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G180000.1.p
Common NameSb05g023910, SORBIDRAFT_05g023910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 256aa    MW: 28441.5 Da    PI: 9.7581
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G180000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.8e-111150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+  r  t+ +  + + KKA+EL +LC+++ +v++++ 
  Sobic.005G180000.1.p 11 ISNNATRRATYKRCYKSLAKKASELTTLCGTNMCVVVYGD 50
                          999***********************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-17179IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.806150IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-9160IPR002100Transcription factor, MADS-box
CDDcd002667.58E-19277No hitNo description
PfamPF003197.6E-111152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MARKKVNLQW ISNNATRRAT YKRCYKSLAK KASELTTLCG TNMCVVVYGD GKAQPEVWPS  60
DEEAKKLLKK FKDMPNLGSL KKTQSQAEFL QSRTFKLHEQ TSKLDQENRE RETLGLLHDR  120
LDGRRPGLVG TSKDELISLG EIVEIKMTKA KARIQQLVGR QGSLPDPFQV MPPVSSSLQT  180
QASSYTYNKM QITAPLEEHL QQQDWPLASQ LAPNYGELGS ALYDGFVGSS RDPSGSGCPM  240
MQPYNLGFSS GLPRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G180000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317894.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A1B6PT950.0A0A1B6PT95_SORBI; Uncharacterized protein
STRINGSb05g023910.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-22M-type_MADS family protein