PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G317000.1.p
Common NameSb04g034800, SORBIDRAFT_04g034800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRF
Protein Properties Length: 397aa    MW: 42885.7 Da    PI: 8.3554
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G317000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.7e-2589132144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  Sobic.004G317000.1.p  89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 132
                           79***************************************998 PP

2QLQ582.8e-201852236
                   QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                          +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++
  Sobic.004G317000.1.p 18 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 52
                          9******************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-111753IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8141853IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.8E-141850IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57389133IPR014977WRC domain
PfamPF088792.1E-2090132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMMMSGRAGG GATAGRYPFT ASQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDSALA  60
TSPSLAFPPQ PSLGWGCFGM GFSRKPDEDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM  120
HRGKNRSRKP VEMSLATPAP ASAVSSATSA TAAAAAATTT TSSPAPSYRP APTSHDASPY  180
HALYGGGSPY SASARPAGGP GPYHHPAQVS PFHLHLETTH PHPPPSYYSV DQRDYAYGHA  240
TKEVVGEHAF FSDGAAERDR QHAAGQWQFK QLGMDTKPSP TSLFPVAGYG NGAGASPYGV  300
DLGAKEDDEE ERRRQQQQHC FVLGADLRLE RPSSGHDAAT AQKPLRPFFD EWPHEKGNKG  360
GSWMGLDGET QLSMSIPMAA SDLPVTSRYR NGAHYE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.42540.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G317000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847480.0KF184748.1 Saccharum hybrid cultivar R570 clone BAC 035B09 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316189.10.0growth-regulating factor 1 isoform X1
SwissprotQ6AWY81e-172GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLA0A194YSJ10.0A0A194YSJ1_SORBI; Uncharacterized protein
STRINGSb04g034800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-49growth-regulating factor 5