PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G294100.1.p
Common NameSb04g032800, SORBIDRAFT_04g032800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 338aa    MW: 34924.8 Da    PI: 6.0392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G294100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05526223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          +C+ C+++F ++  L  H+r+H
  Sobic.004G294100.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                          6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.305431IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.02E-6526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139126.5E-5627IPR007087Zinc finger, C2H2
SuperFamilySSF576678.02E-6179203No hitNo description
SMARTSM00355170184204IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-7186208IPR007087Zinc finger, C2H2
PfamPF139122.8E-12249271IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6249271IPR007087Zinc finger, C2H2
SMARTSM003552249271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSIAR AQAAAAAAKQ QISSASSAST SFAAVADEDV  60
GLKTPAASTY GLRENPKRSL RVADAAFSDR ESEAESTPPH AKRVNAAPVW GEPEPASSLS  120
EVSTPEDVAL SLMMLSRDSW PSAVLAEDDG SDDGSDDGYA PPPAPPLPRA PTPAPPPVEK  180
RTQFMCVACK KVFRSYQALG GHRASNVRGG RGGCCAPPPQ PPLSPLPEHR DGDGDEDEDM  240
DMDAKQQPRE CPHCYRVFPS GQALGGHKRS HVCGAAAAAS SLAGTGTATA TASTTSPAAT  300
PPSPINNCPC MIDLNVAPPS EDAELSAVSD PHFNPGA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.139476e-33pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G294100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454530.11e-149zinc finger protein ZAT1
TrEMBLA0A1Z5RQM20.0A0A1Z5RQM2_SORBI; Uncharacterized protein
STRINGSb04g032800.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-20C2H2-like zinc finger protein