PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G285400.1.p
Common NameSb04g032140, SORBIDRAFT_04g032140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 596aa    MW: 61440.8 Da    PI: 8.7516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G285400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k F r  nL+ H r H
  Sobic.004G285400.1.p  92 FVCEVCNKGFQREQNLQLHRRGH 114
                           89*******************88 PP

2zf-C2H211.60.00084169191123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +++
  Sobic.004G285400.1.p 169 WKCDKCSKRYAVQSDWKAHSKVC 191
                           58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.02E-791114No hitNo description
Gene3DG3DSA:3.30.160.608.2E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PfamPF121713.9E-592114IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355290134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-4157189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQQLLPPA PLLSAAASSS AVSGQATGAS  60
PPPVKKKRNL PADPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKDPAQAQR RRVYLCPEPT CAHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPP GLTASHLYGA  240
TSAANMGLSL SQVGSHLAST LGADAHSHHQ DLLRLGGGSA ASRLDHLLGP SNAASAFRPL  300
PPPPSSAFLM GAPQEFAGDG DGTGSHGFLQ GKPFHGLMHL PDLQGNGAGG PSASSAPGLF  360
NLGYIANSAN SSGTSSHGHA SQGHLTSDQF SEGGGGGGGG GGGGGGGSES SAAMLFSGGG  420
NFSGGDHQVA PGGMYNNDPA VMLPQMSATA LLQKASQMGS SASAQGGVSV FGGLVGSSAP  480
SAMHARPPML DQSQMHLQSL MNSLAAGGMF GGANSGSMID PRMYDMDQDV KFNQQGGRGG  540
AEMTRDFLGV GGGGVMRGMT VPRGGHQTDG AAGDMSSLEA EMKSASSPFT GSRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34165227365Zinc finger protein JACKDAW
5b3h_F1e-34165227365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.175150.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G285400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315503.10.0protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_021315504.10.0protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_021315505.10.0protein indeterminate-domain 4, chloroplastic isoform X1
TrEMBLA0A194YS730.0A0A194YS73_SORBI; Uncharacterized protein
STRINGSb04g032140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-106C2H2 family protein