PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G256200.1.p
Common NameSb04g029480, SORBIDRAFT_04g029480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 407aa    MW: 44561.5 Da    PI: 4.9287
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G256200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.6e-07445540
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           C+ +++++  ++C+++   lC +C  + H+       Ht++
  Sobic.004G256200.1.p  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                          7*****************************657888889876 PP

2zf-B_box28.24e-094788540
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           C+++++++++  C +++  lC++C  ++H        H+++
  Sobic.004G256200.1.p 47 LCDRCGSQPASVRCLEDNASLCQNCDWNGHDAasgasgHKRQ 88
                          7*****************************447778888876 PP

3CCT62.51.3e-21349392144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Sobic.004G256200.1.p 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 392
                           899*************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000214.91E-6447No hitNo description
PROSITE profilePS501199.6134390IPR000315B-box-type zinc finger
PfamPF006434.3E-64788IPR000315B-box-type zinc finger
CDDcd000215.40E-84790No hitNo description
SMARTSM003360.00684890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368349391IPR010402CCT domain
PfamPF062031.1E-16349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC  60
LEDNASLCQN CDWNGHDAAS GASGHKRQAI NCYSGCPSSA ELSRIWSFIM DIPTVPAEPN  120
CEDGLSMMTI DDSDVTNHHD ASDDKRLLEI ANTTLMSDPP SADKPKPLIS SSSGDGFDVL  180
PLATDQPAGS VSVTPKVPYA RDDDNFNDGM YEDLCVDDAD MTFENYEELF GTSHIRTEEL  240
FDDAGIDSYF EMKETQPFDF NEEPKTMQLE CSNVVSADCG MLNPGARADS SLCIPVRQVR  300
SSISHSLSGL TGESSAGDHQ DCGVSPMLLM GEPPWHSPGP EGSVAGGSRD SALTRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL SQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.151070.0leaf| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G256200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353980.0BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds.
GenBankEU9722430.0EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454366.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-121COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLC5XZS40.0C5XZS4_SORBI; Uncharacterized protein
STRINGSb04g029480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-96B-box type zinc finger protein with CCT domain