PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G243900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 423aa    MW: 47056 Da    PI: 9.542
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G243900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.5e-2336101171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           rk+ksL+ll+++f+ l+++ + + + l+e+ak L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Sobic.004G243900.1.p  36 RKDKSLGLLCSNFVVLYNRDDVESIGLDEAAKCL---GV--ERRRIYDIVNVLESVGILVRKAKNRYTWIG 101
                           79****************9999************...**..****************************98 PP

2E2F_TDP80.61.4e-25180260171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                           rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Sobic.004G243900.1.p 180 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKihqgdTRKPAFRWLG 260
                           79*****************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-2532102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.97E-1635100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2736101IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2037101IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-23177261IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.3E-33180260IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-20181260IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.39E-13182261IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASALPQEKE QQQARRPMHA GVGGAGANGR HHAYSRKDKS LGLLCSNFVV LYNRDDVESI  60
GLDEAAKCLG VERRRIYDIV NVLESVGILV RKAKNRYTWI GFGGVPMALR ELKERALREK  120
SGLAPLQNEQ QFAGIISDDE DDDTMGNPGA DNENEKLSQT MDNPSNKPGA PRCRLRSDHR  180
KEKSLGLLTQ NFVKLFLTME VDTISLDEAA KLLLGEGHEE TNMRTKVRRL YDIANVLSSL  240
NLIEKIHQGD TRKPAFRWLG RATTPNTENG VTVAVPPPGK TTSNKRAFGT ELTNIDIHRS  300
NLDSKVQKKA KLAQSGSDVL TNCKLALRSQ LGQGKQSGFV YGHFHPAGAR KHELDGGNKP  360
GQRERAQDWE SLSASFRPQY QNQALSDLFA HYVEAWKTWY SEFAQGSNIM QQHFGHSVNH  420
FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-39352523228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611850.0BT061185.1 Zea mays full-length cDNA clone ZM_BFb0119O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452578.10.0hypothetical protein SORBIDRAFT_04g028440
RefseqNP_001307734.10.0hypothetical protein
TrEMBLC5XZ720.0C5XZ72_SORBI; Putative uncharacterized protein Sb04g028440
TrEMBLK7U6480.0K7U648_MAIZE; Uncharacterized protein
STRINGSb04g028440.10.0(Sorghum bicolor)
STRINGGRMZM2G361659_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1