PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G207200.1.p
Common NameSb04g025260, SORBIDRAFT_04g025260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 339aa    MW: 35223.7 Da    PI: 9.2189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G207200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12274319655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L++l+P+     +k  s a++L +Ave+Ik Lq
  Sobic.004G207200.1.p 274 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTADMLDLAVEHIKGLQ 319
                           689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.748268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-15271332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12272323No hitNo description
Gene3DG3DSA:4.10.280.107.9E-15273331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRRFLPAGGG GGGGGEPSSS SSSGGQHQHG GGLAGERAAA GLRYRGGDIS LGHGHDDGHR  60
RHQYHLGAGD AADRQNDGSM DMLARHSSSP VGFFSNLVMD NGYPRSNKAG VSGGGEGQRD  120
PSTANNNSGS SSSGRKMKPS SSGFNFAGGT QQQGQQQGAA GGHLSRISED GCASFPAGGL  180
VGDRAAGGRG SGESSSGGAA AAARSYSGGF SIVGPWEESR DIITTLGAYD PQFSGAMAGT  240
ALEMAGMDRY MQLQQDQVPF KVRAKRGCAT HPRSIAERER RTRISEKLRK LQDLVPNMDK  300
QTSTADMLDL AVEHIKGLQS ELQALKHEQE KCTCCRKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G207200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452412.10.0transcription factor bHLH80
TrEMBLC5XX690.0C5XX69_SORBI; Uncharacterized protein
STRINGSb04g025260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-45bHLH family protein