PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G159500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 277aa    MW: 29897.2 Da    PI: 5.084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G159500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-193788156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g+
  Sobic.004G159500.1.p 37 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 88
                          5799******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-283796No hitNo description
PfamPF008474.2E-113887IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-283895IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-213895IPR016177DNA-binding domain
SMARTSM003801.6E-3238101IPR001471AP2/ERF domain
PROSITE profilePS5103221.4563895IPR001471AP2/ERF domain
PRINTSPR003671.4E-83950IPR001471AP2/ERF domain
PRINTSPR003671.4E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDFSYFFSSS SSSEKKSSTK RRQQQQQHQQ DNNGNETRYL GVRRRPWGRY AAEIRDPATK  60
ERHWLGTFDT AEEAAIAYDR AARNIRGANA RTNFAYPDLP PGSSVTPYLS PDLSADQLQH  120
YYYAAADPVA PAAAHQLATT PDCDHHQSAH GGGAGGNDPV YHQYHHVPVE TTMPSYGGAA  180
DASFMAYGGN AEMGMYCFEG ANNGAAGGGD DRAWCDASEL QFGGHNDDTA AAAAANASHG  240
MYFEEGYLHS PMFSPMPAAD EVVDGFQLGG SSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-173994662ATERF1
3gcc_A2e-173994662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G159500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452175.20.0ethylene-responsive transcription factor LEP
TrEMBLA0A194YQ310.0A0A194YQ31_SORBI; Uncharacterized protein
STRINGGRMZM2G047999_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-23ERF family protein