PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G445800.1.p
Common NameSb03g047520, SORBIDRAFT_03g047520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 218aa    MW: 23951.9 Da    PI: 10.1916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G445800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.3e-204175135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Sobic.003G445800.1.p 41 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 75
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.3E-1935102IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.4423571IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-133674No hitNo description
CDDcd002022.90E-154076No hitNo description
Gene3DG3DSA:3.30.50.104.4E-164075IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
PfamPF003205.2E-184175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEVEMEVEMG TDPNPNPNPN PNTSPSAADD AATASGEAKA CADCHTTKTP LWRGGPEGPK  60
SLCNACGIRY RKRRRQALGL DAAAADSQQD QQQPKKKATA DPQQQDQHHL RKKAADPQQQ  120
DQHHLRKKAA AAATTDPQQQ DRKKAAAASS TNKKDKDKED NKKKKDQQVT VELRVVGFGK  180
EVMLKQRRRM RRKKCMSEEE RAAVLLMALS SGVIYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRRR
2155164KDKEDNKKKK
3185191QRRRMRR
4186193RRRMRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170860.0callus| pollen
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674447e-74EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459187.11e-159hypothetical protein SORBIDRAFT_03g047520
TrEMBLC5XJF81e-159C5XJF8_SORBI; Putative uncharacterized protein Sb03g047520
STRINGSb03g047520.11e-158(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-18GATA transcription factor 16