PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G417500.1.p
Common NameSb03g045120, SORBIDRAFT_03g045120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 521aa    MW: 54699.9 Da    PI: 8.1222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G417500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0596118123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Sobic.003G417500.1.p  96 FVCEICHKGFQRDQNLQLHRRGH 118
                           89*******************88 PP

2zf-C2H212.30.00051210228523
                           TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                           dCg++Fsr++++++H   +
  Sobic.003G417500.1.p 210 DCGTVFSRRDSFVTHRAFC 228
                           9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-695118No hitNo description
Gene3DG3DSA:3.30.160.607.9E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.63796118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-4168200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.88E-6175200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSGGSSSLSS VSNTPREVEE KFLQYHIQPL LGGPMEMQNG GGGGDLQHVI GGPSEPLPPA  60
PPPPTVKKKR SLPGTPDPSA EVIALSPRTL MATNRFVCEI CHKGFQRDQN LQLHRRGHNL  120
PWKLRQRGGA GADGPGGGPP RKRVYVCPEA SCVHHNPARA LGDLTGIKKH YCRKHGEKKW  180
KCERCAKRYA VHSDWKAHAK VCGTREYKCD CGTVFSRRDS FVTHRAFCDA LAQENNKLSQ  240
PMNMATVASA LQGQAAPHHL APPSSSSQPE DDLDAAAGED NDDDFALDTK SPKLRMLPTM  300
SDADATAANQ LLLPPLSMAG CMLSSLQHGA ARPAPPTPPS PATFFSGVKA GLDGPSSSCD  360
PSMGGAFSPP GASASMSATA LLQKAAEMGA TAGGYGVGAG FSTVGFGPMI GGPPVMGPFG  420
PLKTPAVLEP FDGLPFGQTH LVGLDVGRLL PGQHFYGSSH GHGHGVGSMT RAIGSLMHGG  480
QQMDHRRPDD VRVVDYLGVD DQRSCFSGVS PFGPDLGPWS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34176243370Zinc finger protein JACKDAW
5b3h_F2e-34176243370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.171583e-76root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G417500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459052.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-104IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLC5XH470.0C5XH47_SORBI; Uncharacterized protein
STRINGSb03g045120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]