PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G340100.1.p
Common NameSb03g038410, SORBIDRAFT_03g038410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 249aa    MW: 26226.5 Da    PI: 6.5064
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G340100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.92.2e-40571561100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+kll ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ 
  Sobic.003G340100.1.p  57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKLLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNA 145
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+ael+++++e
  Sobic.003G340100.1.p 146 LEAELEAVRAE 156
                           ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.05756157IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4057154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSTERERVDE IGKKIKREPD TAALAVAVAS ASTVPADNHI PHRLGLGLGG VLNTLTPCAA  60
CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK LLLEVAEGER ADAASSLVYE  120
ANLRLRDPVY GCMGAISMLQ QQVNALEAEL EAVRAEILKH RYRQAGGGNR LIDDDAHATA  180
SFVAPASAPV HVNDVVSVVE AGQEVAATGG GASGMSTSSA VYVAEAEQPA STNHYSSRNP  240
SEHPAYFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-435716711121LOB family transfactor Ramosa2.1
5ly0_B9e-435716711121LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G340100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686990.0BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311604.10.0LOB domain-containing protein 15 isoform X3
SwissprotQ8L5T52e-68LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1B6Q6U20.0A0A1B6Q6U2_SORBI; Uncharacterized protein
STRINGSb03g038410.11e-180(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-62LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]