PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G324400.2.p
Common Name37, AP, AP37, Sb03g037080, SORBIDRAFT_03g037080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 243aa    MW: 24932.3 Da    PI: 9.3711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G324400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-203283156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAaka++aa+++++g+
  Sobic.003G324400.2.p 32 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDAAAREFRGA 83
                          68********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.15E-193290No hitNo description
PfamPF008471.6E-143282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-323390IPR001471AP2/ERF domain
PROSITE profilePS5103224.1843390IPR001471AP2/ERF domain
SMARTSM003801.7E-363396IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-223391IPR016177DNA-binding domain
PRINTSPR003676.7E-113445IPR001471AP2/ERF domain
PRINTSPR003676.7E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPRVADKSP LPPATGLGLG VGGVVGGVGM GPHYRGVRKR PWGRFAAEIR DPAKKSRVWL  60
GTYDTAEEAA KAYDAAAREF RGAKAKTNFP FPSQCAVAAG GAGSPCSNST VDSSGGASGC  120
AVQAPMQAMP LPPALDLDLF HRAAAVNAVT AGGMRFPFKG YPVARPTPHQ YFFYEQAAAA  180
AAAAAGYRML KVAPPPVTVA AVAQSDSDSS SVVDHTPSPP AVTAKKEVGF ELDLNWPPPA  240
EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-223191364ATERF1
3gcc_A2e-223191364ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.106550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G324400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7149720.0JF714972.1 Sorghum bicolor AP 37 protein (AP 37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456479.21e-173ethylene-responsive transcription factor 4
TrEMBLC5XME91e-172C5XME9_SORBI; AP 37 protein
STRINGSb03g037080.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-22erf domain protein 9