PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G253200.1.p
Common NameDof13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Dof
Protein Properties Length: 169aa    MW: 17251.5 Da    PI: 10.7167
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G253200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof78.86.5e-25871351158
                zf-Dof  11 CdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 
                           C  ++tkfCy+nny++ qPr++C+aCrryWt+GGalr v   + grr+ 
  Sobic.003G253200.1.p  87 CPRRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 135
                           66689*********************************98765255554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-1683122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088420.99885136IPR003851Zinc finger, Dof-type
PfamPF027011.0E-2186134IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASHLPDADA AGFKLFGKVI QPPDAHHRAA DEGGAPPQLP PPTTALPPPP PPPPSPPLPP  60
QPPLPLQQQA TGATGGTSGG GGEPLPCPRR ETKFCYFNNY NVRQPRHLCR ACRRYWTAGG  120
ALRRVASASP GRRRPRPTTA RSVAAAAAAA AAASSAAAAA AEEVGGER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G253200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312639.13e-54dof zinc finger protein DOF2.4
TrEMBLA0A1W0VYW01e-112A0A1W0VYW0_SORBI; Uncharacterized protein
STRINGSb03g030850.12e-55(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.18e-18Dof family protein
Publications ? help Back to Top
  1. Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D
    Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis.
    Mol. Biol. Rep., 2011. 38(8): p. 5037-53
    [PMID:21161392]