PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G246800.1.p
Common NameSb03g030310, SORBIDRAFT_03g030310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 245aa    MW: 24611.5 Da    PI: 7.5238
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G246800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20118152135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Sobic.003G246800.1.p 118 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 152
                           ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.7E-20112172IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.325112148IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-14115153No hitNo description
Gene3DG3DSA:3.30.50.102.8E-17116152IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-13117149No hitNo description
PROSITE patternPS003440118143IPR000679Zinc finger, GATA-type
PfamPF003205.5E-18118152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFAAAAA GDHYYKHCGG GGGGDGEAFS AGGPYGASVD  60
CTLSLGTPST RRAEAGAARA PAAAAAGLHW EAPSAPSCNG RQQQQQETRG AEAGARRCAN  120
CDTTSTPLWR NGPRGPKSLC NACGIRYKKE ERRAAAAAVA PAAAAALAAD GGVDYASYGY  180
ARQPQQWGCY GPAAVAKAAS FGMFGDAAAA EVVDGPCLPW GLGVMPSSPA FGTVREMPSL  240
FQYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G246800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458269.21e-173GATA transcription factor 15
TrEMBLA0A1B6Q5481e-172A0A1B6Q548_SORBI; Uncharacterized protein
STRINGSb03g030310.11e-169(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-26GATA transcription factor 19