PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G204200.1.p
Common NameSb03g026620, SORBIDRAFT_03g026620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 252aa    MW: 28607.5 Da    PI: 6.955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G204200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.8e-15154243299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            +  t s+v+   +l lpk f+++h  k  ++ t+tl de+  + +  + +rk++    l++GWkeF+ + +L +gD +vF+l++r++f
  Sobic.003G204200.1.p 154 TQPITLSHVTGGFWLDLPKYFCQKHLPK--SDETITLVDEEDDESDTLYLVRKTG----LSTGWKEFAIERKLLDGDCLVFQLIERTKF 236
                           556677999999*************433..5569*****9999999999777777....9************************98888 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                             +v ++r+
  Sobic.003G204200.1.p 237 --KVYIIRA 243
                           ..9998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-21146244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-18148244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-22151242No hitNo description
PROSITE profilePS5086311.096153244IPR003340B3 DNA binding domain
SMARTSM010194.9E-17153244IPR003340B3 DNA binding domain
PfamPF023625.1E-12157243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SAAVREAAAA AKPSSAKKRK AQVPRDAAAE  60
PLRRSGRVAN LPEKPIYREV KVNSPFLQVS KSNASVLWDA ATSVVAEPLR WSGRLANLPE  120
KPMYREDSDE ERSYAISKAD ELVQELGSSF PIFTQPITLS HVTGGFWLDL PKYFCQKHLP  180
KSDETITLVD EEDDESDTLY LVRKTGLSTG WKEFAIERKL LDGDCLVFQL IERTKFKVYI  240
IRATSYFESE Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G204200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417820.0BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
GenBankJX4284930.0JX428493.1 Zea mays subsp. mays clone pUT3090 ABI48 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455874.10.0B3 domain-containing protein Os06g0194400
SwissprotQ69V363e-85Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLC5XPJ70.0C5XPJ7_SORBI; Uncharacterized protein
STRINGSb03g026620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]