PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G203833.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 110aa    MW: 11935 Da    PI: 4.5239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G203833.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-1233943198
                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          +  + +tl de+  ++ + +  + ++    l++GW +Fv +++L +gD +vF+l++r+ f  +v ++r
  Sobic.003G203833.1.p 33 ALCIGITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 94
                          4567799*************..6666..569************************98777..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.22196IPR003340B3 DNA binding domain
PfamPF023628.7E-103295IPR003340B3 DNA binding domain
CDDcd100171.97E-143494No hitNo description
SuperFamilySSF1019362.55E-123795IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-104195IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEAGALDKLA SGNCWLLLCV LLGLTNCMVQ KSALCIGITL VDEEDDKFCM LYQPSKAALS  60
TGWGGFVVDH KLLDGDCLVF QLIERTMFKV YIIRAASYLK ASTDEASSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G203833.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311549.15e-46B3 domain-containing protein Os06g0194400 isoform X1
RefseqXP_021311550.15e-46B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ69V366e-24Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1W0VY691e-73A0A1W0VY69_SORBI; Uncharacterized protein
STRINGSb3113s002020.15e-37(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]