PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G194600.1.p
Common NameSb03g025790, SORBIDRAFT_03g025790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 482aa    MW: 51621 Da    PI: 8.5113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G194600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-0678100123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cgk F r  nL+ H r H
  Sobic.003G194600.1.p  78 FVCEICGKGFQRDQNLQLHRRGH 100
                           89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-777100No hitNo description
Gene3DG3DSA:3.30.160.601.3E-578100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61478100IPR007087Zinc finger, C2H2
SMARTSM003550.01278100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355130121151IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.49E-7151176No hitNo description
SMARTSM00355160156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MFHHQQEFLQ AEAAAAADRE SSMSNLTSSA NAAPAAAAVP PPPAAGNNKR KRSLPGNPDP  60
EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG TGKEAQRKKV  120
YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVHSD WKAHSKICGT  180
REYKCDCGTI FSRRDSFITH RAFCDALTEE SAKAIGLNAM AAAPAPAHLH HHPLLFSPPP  240
AAHVMQQQQQ VDVALLQDHH HHHQHQEVMQ PPPQQHCNYA MKTEMPPWPP AMAYDHSLML  300
PAAQSSATSA PPPPQPQLPA ASAHLSATAL LQKAAQMGAT IGGAGTGYTQ MAGAATSAPG  360
TASSFGLGLP GLQNAHHHQQ QDGAGVMSAG LARTASSHGR SGEEGGADGM TRDFLGLRAF  420
SHRDILGLAG LDSSCMGAIT ANASMSCYEP QQQHAQPQAH QAQQQQQQSS NEPWHGMGSH  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34152218369Zinc finger protein JACKDAW
5b3h_F7e-34152218369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G194600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455824.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLC5XNS20.0C5XNS2_SORBI; Uncharacterized protein
STRINGSb03g025790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.19e-94indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]