PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G372100.1.p
Common NameSb02g039060, SORBIDRAFT_02g039060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 551aa    MW: 58296.9 Da    PI: 6.5749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G372100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.32.5e-581525352374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.....sseelaalkl. 83 
                           ++lL  cA a+++g+l ++q+lL  l elas +g+p++Rlaa+ ++AL +rl + v e ++a  ++ + +  +     ++ +l+  +l 
  Sobic.002G372100.1.p 152 EQLLNPCAAAIEAGNLPRTQHLLYVLGELASFSGEPNHRLAAHGLRALTRRLPHAVGEAAAATvKMPSCECPTplfsgVDLRLFCASLi 240
                           689*************************************************9955444444313333322225675444444444448 PP

                  GRAS  84 .fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeel 158
                            f+evsP++ + + +aN+aI  a++++      ++vH++D+++s+G+QWp+Ll+aL+  p  + pps+R+T+ g+ ++       +   
  Sobic.002G372100.1.p 241 rFNEVSPWFAVPNALANSAIAHAASTKgavtgpRQVHVVDMGVSHGVQWPTLLEALTRVPrgSTPPSVRLTVAGPTATPpvpfsASPPG 329
                           9*********************99998777777888*********************76644889*********976668999888999 PP

                  GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                +L ++A+++++++++    a  l++l   +  + pgE+l+V+l+++l +        ++e+  +L++v++l+P+++v++e ++ 
  Sobic.002G372100.1.p 330 YDCSPQLLRYAKSIDLDLSIVQ--APFLDTL---HGTLTPGETLIVCLQFRLGHAT------ADEQAVILRTVRDLNPELMVLTELDVG 407
                           9****************99876..3444444...334699**********999997......3334689******************66 PP

                  GRAS 248 h..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                              n  s + +f+  le  + ++ds++a +   + +er+++E e     +  ++a   ++        e+Wr+rl +aGF+++++  +a
  Sobic.002G372100.1.p 408 GgrNVDSAASEFAARLELLWRFLDSTAAAFKGMDaDERRVMEVE-----AGTALAPTARRGATVGGGRESWRARLAAAGFEEAAFAGEA 491
                           544999********************777644332666666655.....56666666666566788899******************** PP

                  GRAS 334 akqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSaWr 374
                           +++ak+llrk++s+ +++       +++v l Wk++p+ ++S Wr
  Sobic.002G372100.1.p 492 VETAKALLRKYDSR-WELVppsPPAAAAVgLRWKGQPVSFCSLWR 535
                           ************66.566544333566667**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.768125512IPR005202Transcription factor GRAS
PfamPF035148.6E-56152535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNNEREEQEP AAATTSDWLD ESIAFLAANL DLGFNDYGLL STASEAQEQH DVGGMIVETL  60
PPTATTLHQP SLNLDTSVAS SSPMTSQQEL GQPKKRKSPG HSSSQRPHAG GGGRGGGQQE  120
MGEASCVRSK PSKKVNGKGT AANSDREARW AEQLLNPCAA AIEAGNLPRT QHLLYVLGEL  180
ASFSGEPNHR LAAHGLRALT RRLPHAVGEA AAATVKMPSC ECPTPLFSGV DLRLFCASLI  240
RFNEVSPWFA VPNALANSAI AHAASTKGAV TGPRQVHVVD MGVSHGVQWP TLLEALTRVP  300
RGSTPPSVRL TVAGPTATPP VPFSASPPGY DCSPQLLRYA KSIDLDLSIV QAPFLDTLHG  360
TLTPGETLIV CLQFRLGHAT ADEQAVILRT VRDLNPELMV LTELDVGGGR NVDSAASEFA  420
ARLELLWRFL DSTAAAFKGM DADERRVMEV EAGTALAPTA RRGATVGGGR ESWRARLAAA  480
GFEEAAFAGE AVETAKALLR KYDSRWELVP PSPPAAAAVG LRWKGQPVSF CSLWRPAQAS  540
PELMVMGRGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-2314853630420Protein SHORT-ROOT
5b3h_E1e-2314853630420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G372100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461006.10.0scarecrow-like protein 29
TrEMBLC5XDZ40.0C5XDZ4_SORBI; Uncharacterized protein
STRINGSb02g039060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-79GRAS family protein