PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G350500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 319aa    MW: 34027.6 Da    PI: 6.5114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G350500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-184999155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Sobic.002G350500.1.p 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99
                          79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-124999IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1949108IPR016177DNA-binding domain
CDDcd000185.49E-1749107No hitNo description
PROSITE profilePS5103220.16550107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2750107IPR001471AP2/ERF domain
SMARTSM003807.2E-3550113IPR001471AP2/ERF domain
PRINTSPR003676.3E-75162IPR001471AP2/ERF domain
PRINTSPR003676.3E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELLHFQAQP PVFQLEDYSS YYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGT DARTNFAPRI SPDCPLAVRI  120
RGLLHHKKIK KAKAAAASSS AAAVAAAAKQ QASSSPVPTT SNSNSNSNSN SHSTNSACGG  180
GSSSSSSMSS SSSSCDDAIA MPHGGIGALD AGEVYRPEFA TAGAEEFDSW MFDSAFGQFP  240
ALDSFAAVDD AVPAAGTTEE SVAAATPGDE MAEFERIKVE RRISASLYAM NGLQEYFDRV  300
IDASACDSLW DLSPLCHH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404150.0BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
GenBankJX4699530.0JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670505.11e-139PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A060D1001e-139A0A060D100_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G011236_P011e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-27related to AP2 11