PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G202800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 296aa    MW: 31772.5 Da    PI: 7.236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G202800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.6e-29119177259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rsa+d+ +++ tYegeHnhe
  Sobic.002G202800.1.p 119 KDGYHWRKYGQKVTRDNPYPRAYFRCAYApSCPVKKKVQRSADDNLMLVATYEGEHNHE 177
                           8***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.418113179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-28113178IPR003657WRKY domain
SuperFamilySSF1182901.96E-25114178IPR003657WRKY domain
SMARTSM007743.5E-35118178IPR003657WRKY domain
PfamPF031061.3E-24119177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMDSTNGEC SSPTASAVGL LPLFGSSRPP PQAESLEEKL RRVSEENRRL APALDAILSA  60
DRSNHPRALA TSPPAQQQGN AALTTQAATG VVVTAEPRHK VRTVRARAEP ADADANHLKD  120
GYHWRKYGQK VTRDNPYPRA YFRCAYAPSC PVKKKVQRSA DDNLMLVATY EGEHNHEQHA  180
QSEYSYINDA STTSQQQQPQ AGGSSSSTLP CSIISINSLG RTITLGLADQ RRPGSSSNAE  240
AAAVVVGEIV TPELRKVLVD ELASLLKNDP EFIESLATAV ADRVMERIPA AGHIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201181771472WRKY transcription factor 1
2lex_A3e-201181771775Probable WRKY transcription factor 4
1wj2_A3e-201181771775Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.159233e-53leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560895e-88EU956089.1 Zea mays clone 1557298 WRKY62 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7281995e-88KJ728199.1 Zea mays clone pUT6474 WRKY transcription factor (WRKY104) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462385.10.0hypothetical protein SORBIDRAFT_02g024765, partial
TrEMBLC5XCU60.0C5XCU6_SORBI; Putative uncharacterized protein Sb02g024765 (Fragment)
STRINGSb02g024765.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP129212834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-35WRKY DNA-binding protein 40