PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G198400.1.p
Common NameSb02g024450, SORBIDRAFT_02g024450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 269aa    MW: 28933.9 Da    PI: 6.2305
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G198400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.2e-34103175366
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........s 66 
                            ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai  l+ t         +
  Sobic.002G198400.1.p 103 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIERLAATdlsqrsvggG 175
                           689************************************************************4433333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-33104167IPR005333Transcription factor, TCP
PROSITE profilePS5136934.52104162IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLPYPNPHHF GVSQEPPHPN PTSFPMLPPG AHLDQQHYVD HHFFPGHGHF NSETLEAVLR  60
PTRAAPECEA AVAAAAQQGG RRNGVPAGGG QGQGHARARK RPFRTDRHSK IRTAQGVRDR  120
RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAIE RLAATDLSQR SVGGGSDDAA  180
LSPPTSGAAA DGPGKRGGVA EKLSSRSGGS ASMEMEHTCD LDRLVSAAPV LREYYYGLSE  240
MMSNDNGGDG DDDGEYEEDG DFLDGMQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G198400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9516380.0JQ951638.1 Sorghum bicolor retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460202.10.0transcription factor PCF5
TrEMBLC5XC810.0C5XC81_SORBI; Uncharacterized protein
STRINGSb02g024450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.13e-28TCP family protein