PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G142000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 491aa    MW: 54620.5 Da    PI: 4.7955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G142000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17156245299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           +k +++s+v k  +l lpk+f+++h   +++++ ++lede+g+    ++   +++++  +++GW++F+ ++g+k+gD+vvF+l+++++f
  Sobic.002G142000.1.p 156 VKHMLRSHVVKGFWLGLPKHFCDKHL--PNRDVGIVLEDENGEDHHTTY--LGYKQG--ISAGWRGFAIDHGIKVGDVVVFELVKSTKF 238
                           68899********************5..347788***************..999988..89*********************9987777 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                             +v ++r+
  Sobic.002G142000.1.p 239 --KVYIVRA 245
                           ..8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-20148246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23150247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-26153244No hitNo description
SMARTSM010195.4E-20155246IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252155246IPR003340B3 DNA binding domain
PfamPF023623.4E-15156245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGIDQPIKRK RGRPAGSRST NSEMEEKMKL IKWRTDLLDS GAGSSESDKD DDAIPMDDEL  60
AIVVANEPAA LAIHCGDTDD DDGEVIPIEI VRPRRVGPKK RKLPGVPQTQ ISLIGSETQN  120
RILENIYCNV DENRESAVAR AEEIQSNLPA EHPSIVKHML RSHVVKGFWL GLPKHFCDKH  180
LPNRDVGIVL EDENGEDHHT TYLGYKQGIS AGWRGFAIDH GIKVGDVVVF ELVKSTKFKV  240
YIVRANGFTT ADVDSNLQNL EARKKGEEQS CEDVISEEDT TTNNREVPPS DGSSRNGIGI  300
SDSEIDFDDV TSFSDVNVIL DCLATDCEFH DRLRRTYYEL CCSQKSLLHG HLLKQLQPTL  360
VAGVIMETVS IADGIRACKA EASSREDFLV WKKTLESFEL LGMNVAFLLN RVNGLLGAAS  420
PSRESYAEWQ DKYEELKLER ARAGDKMKAL ELRLSNVKDV LQKVDSEMEE LQSSLKKSDE  480
ALQELASAPW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192101PRRVGPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G142000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309566.10.0B3 domain-containing protein Os01g0234100 isoform X1
SwissprotQ0JP991e-156Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A1W0W3Z90.0A0A1W0W3Z9_SORBI; Uncharacterized protein
STRINGSb02g013060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-40B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]