PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 661aa    MW: 68964 Da    PI: 10.7957
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.41.5e-23544606163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Sobic.002G076100.2.p 544 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 606
                           89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.3E-8412521No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-16541603No hitNo description
PfamPF001706.5E-21544606IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-22544608IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185546609IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11547602No hitNo description
CDDcd147026.80E-22549600No hitNo description
PROSITE patternPS000360551566IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MTDKVGSQQS TFSSLTRVTY QARRAATGRL APVAQGPRPS TTRAAGRFPS GLGACRAVLL  60
RAATQGRGSR RVRLSPHVRT TSHPPTPTDS RARSPTLTHR AHHLYGVPSP PSSLTARPPN  120
DYLSLHWHHR PSPPPPVIAY ASPAPRTHPR PSVADAWARV PKSAVTVSIP LADAPGPAEA  180
QANRVTPRRR AAVLRAHGKA YTGTGGGRAP NPSEAGAFLL LAGTAAAGWL LPHTAPPVGS  240
PPATRSTRPT TPKPTDRHRC SLARFRPGRT GGLQISSPAP RGLTDPHGVQ PKPPEPPAAA  300
AVVAAAAAAV PPQTHAEWAA SLQAYYAAAG HHPYAWPAQH LMAAAAAGAP FGTPVPFPVY  360
HPGAAAAYYA HASMAAGVPY PTSEAVPAVV PAAPLPEGKG KGKGGGASPE KGSSGAPSGE  420
DASRSGDSGS DESSDTRDDD TDHKDSSAPK KRKSGNTSAE GEPSQTAVVR YAAVESPYPT  480
KGRSASKLPV SAPGRAALPS ATPNLNIGMD IWNASPALAV PAVQGEANPG LALARRDGVT  540
QLDERELKRE RRKQSNRESA RRSRLRKQQE CEELARKVAD LTTENSALRA ELDNLKKACQ  600
DMEAENSRLL GPSVTTTLGM SIDPPKVQHH DDEGQLHKKS SNNSNGNYAG VSHKPEANTR  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560566RRSRLRK
2560567RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.107120.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702430.0EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310212.10.0DNA-binding protein EMBP-1 isoform X2
TrEMBLA0A1W0W2W10.0A0A1W0W2W1_SORBI; Uncharacterized protein
STRINGSb02g006350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Representative plantOGRP1275345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-21basic region/leucine zipper transcription factor 16