PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G022600.4.p
Common NameSb02g002080, SORBIDRAFT_02g002080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 555aa    MW: 57283.1 Da    PI: 8.0004
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G022600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12161217155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Sobic.002G022600.4.p 161 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 217
                           78*******************77776664346655.77******************98 PP

2AP247.73.7e-15262311355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.002G022600.4.p 262 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 311
                           9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.37E-17161225No hitNo description
PfamPF008479.4E-10161217IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-14161226IPR016177DNA-binding domain
PROSITE profilePS5103217.359162225IPR001471AP2/ERF domain
SMARTSM003808.3E-23162231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-12162226IPR001471AP2/ERF domain
PRINTSPR003673.7E-6163174IPR001471AP2/ERF domain
CDDcd000182.60E-22260321No hitNo description
SuperFamilySSF541711.18E-17260320IPR016177DNA-binding domain
SMARTSM003802.9E-33261325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18261319IPR001471AP2/ERF domain
PROSITE profilePS5103219.19261319IPR001471AP2/ERF domain
PfamPF008477.7E-10262311IPR001471AP2/ERF domain
PRINTSPR003673.7E-6301321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MALSLQDNPA AAASSFYYYG NGGGGGSGHQ HHGGFLQPCA DLYGGPSEAS LVADDDEAAA  60
AATAMASWVA ARAGESGGVL SAAAAAAGHQ HHHHALALSM SSGSLSSCVT AHPGAAAADY  120
GVVAATASAS LDGGRKRGGA AGQKQPVHHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW  180
DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGPST HINFPLEDYQ EELEEMKNMT  240
RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VSGNKDLYLG TFSTQEEAAE  300
AYDIAAIKFR GLNAVTNFDI TRYDVDKIMA SNTLLPGDLA RRRKDDDPAA VIAGADASNG  360
GGVTTAAAAA ALVQQAAAAA AAGAGGNHSA SSSETWIKVA AAAALQAAGA APRDGNHHHH  420
HHDVLSGEAF SVLHDLVVTA ADGGNGNGNG GHHHHHVHNS AATAQHMSMS SASSLVTSLG  480
NSREGSPDRG GGLSMLFSKP PAPAPAASAH AANKPMSPLM PLGSWASTAA ASARAAAAAV  540
SIAHMPVFAA WTDA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G022600.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459304.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1W0W1W20.0A0A1W0W1W2_SORBI; Uncharacterized protein
STRINGSb02g002080.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-119AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]