PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G513700.1.p
Common NameSb01g047940, SORBIDRAFT_01g047940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 374aa    MW: 39897.9 Da    PI: 4.8244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G513700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12205247754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sobic.001G513700.1.p 205 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 247
                           79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16202268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15205262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-5205252No hitNo description
PfamPF000101.8E-9205247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MELDEEAFLD ELMSLRREAA ASSAPWQQAD PCSAYPGAGG GGGGMMMSDL LFYGGTTEGA  60
AADATSMDLS PFHQEPLQAP MPPAAARTPL PPPHPHEEFN FDCLSEVCNP YRSGGGGVAV  120
PGAEAVAVPG HKQALAALHD AMVEEETSGD LDLQGQQHYG GGGSPTFVFG GGARGESSEM  180
PIVRGVGGPH HHRSKLHGAP SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT  240
IDYVKELTER IKVLEEEIGA SPEDLDLLNT LKDSSSCSNE MMVRNSTKFD VEKRGNGSTR  300
IEICCPTNPG VLLSTVSALE VLGLEIEQCV VSCFSDFAMQ ASCSQEDGKR QVLSTDEIKQ  360
ALFRSAGYGG RCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G513700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647150.0EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465906.10.0transcription factor bHLH61
TrEMBLC5WZ040.0C5WZ04_SORBI; Uncharacterized protein
STRINGSb01g047940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-67beta HLH protein 93