PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G479600.1.p
Common NameSb01g044910, SORBIDRAFT_01g044910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 240aa    MW: 26825 Da    PI: 9.6973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G479600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-14139228198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k++++s+v +  +l lp +f+ +++ k  ++  +tl de+g+++  ++    ++++  l++GW +F+  +g+ +gD  vF+l++ ++
  Sobic.001G479600.1.p 139 FVKAMLHSHVVRGFWLQLPCHFCHTYMPK--QDSIITLVDEKGEEFATNY--LAYKKG--LSGGWAGFALCHGMHDGDAAVFQLIKPTT 221
                           89*********************999744..5669***************..555555..9***********************98666 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           f  +v ++r
  Sobic.001G479600.1.p 222 F--KVYIVR 228
                           6..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-17130229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21132229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-21137228No hitNo description
PROSITE profilePS5086311.307139230IPR003340B3 DNA binding domain
SMARTSM010191.7E-12139230IPR003340B3 DNA binding domain
PfamPF023621.8E-12139229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVTAAAETMG MSPYEAARER NVQENKRKME ALNLRHLSAV IKEAPKTPSP LKPKRRRIIE  60
NAVVVPSPPR RSRRLAQLPE VKYAEIAPHT AERMTRSPRK PADLIYLARS GTVSMKARLE  120
ATRKAEELES QLDPDIPSFV KAMLHSHVVR GFWLQLPCHF CHTYMPKQDS IITLVDEKGE  180
EFATNYLAYK KGLSGGWAGF ALCHGMHDGD AAVFQLIKPT TFKVYIVRAA SDDGSEVDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G479600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465742.11e-179B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-131Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLC5WUX41e-178C5WUX4_SORBI; Uncharacterized protein
STRINGSb01g044910.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]