PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G359800.1.p
Common NameSb01g034370, SORBIDRAFT_01g034370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 378aa    MW: 40142.1 Da    PI: 6.0043
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G359800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731032.5e-3259158297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 
                           lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q
  Sobic.001G359800.1.p  59 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQ 147
                           79*************************8867778***************************************88899*********** PP

                DUF573  87 kifelskkiWg 97 
                            ife+++ iW+
  Sobic.001G359800.1.p 148 AIFEIARTIWR 158
                           **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.9E-3060157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPNPNP VFSSSPVAAP AAAAPASGSG AGAGERRPLF  60
QRLWTDEDEI VILRAFAEFT AQRGTSFASH QYDTTPFYED MRRRLNTGFT KNQLVEKIRR  120
LKRKYRNCVE RLRVAGAGFT FRSPHEQAIF EIARTIWRPA SDKHGRDSDD EGGGVAHDGH  180
FAIAPFGIDV AAAAAANGES AKSPTSRPRR GRRRRTGDFP ADAVTETLAL PPAPMQMPVM  240
TEDALPSFPQ VTAASVMDGG GCGLSVDPPS GLPGALSAAA AATAVSGSST AENPILAAMF  300
KEMVRAMLTV GGGGSTALLG LEPPPPIAGV PMEGEKWRQQ RIRELEVYLR RIDLLQDQAR  360
AALEELRSAP HAGGMNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G359800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876800.0BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542300.0EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285200.0JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465220.10.0probable transcription factor At5g28040
TrEMBLC5WYP90.0C5WYP9_SORBI; Uncharacterized protein
STRINGSb01g034370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-32DNA-binding storekeeper protein-related transcriptional regulator