PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G338600.2.p
Common NameSb01g032580, SORBIDRAFT_01g032580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 329aa    MW: 35573.4 Da    PI: 6.464
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G338600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41e-284110199
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvil 81 
                           +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a    +++ r+++++sl+yeA+ r+ +PvyG+vg+++
  Sobic.001G338600.2.p   4 SCNGCRVLRKGCSDACTIRPCLqwiksPEAQANATVFLAKFYGRAGLLNLLAAPpaaQDHLRPAVFRSLLYEACGRIVNPVYGSVGLLW 92 
                           6**************************************************98633356669*************************** PP

                DUF260  82 klqqqleqlkaelallke 99 
                           ++q++ +q+++e++l ++
  Sobic.001G338600.2.p  93 SGQWHACQAAVEAVLKGQ 110
                           ************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7933112IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-234106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAA  60
QDHLRPAVFR SLLYEACGRI VNPVYGSVGL LWSGQWHACQ AAVEAVLKGQ PVVQVDAAAA  120
PPLMLGGRRF DIRHVAKDPD AAAAADLLRV ARGRKRAASS SCTSSKPSGN KQRRASTGDN  180
DEPLTRRPGQ EAEEEPEPVV EHDHGHDEES AGSHDHHHHH LQAQQQGSEE DTDVEAASHS  240
HSHSHSHSHV SQAEPELQSH APPVSSTQQH ADEDDEEEEV GLELTLGLEP LVRQRQQQQP  300
KSSRYDDHSG LSLSAASSLI CLRLQLPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.26600.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G338600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-146EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-146KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465135.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-71LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1Z5S8Y30.0A0A1Z5S8Y3_SORBI; Uncharacterized protein
STRINGSb01g032580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-58LOB domain-containing protein 40