PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235266.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 211aa    MW: 24299.8 Da    PI: 10.8172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235266.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07119166348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                           rWT  E e lv +v +lG ++W+++ r       Rt  ++k++w+++l
  Sobic.001G235266.1.p 119 RWTSLEVENLVIGVSKLGVRNWTKVKRDYFktSFRTQVNLKDKWRDLL 166
                           9**************************9998999***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.146112170IPR017930Myb domain
SuperFamilySSF466892.09E-12114168IPR009057Homeodomain-like
SMARTSM007175.0E-4116168IPR001005SANT/Myb domain
CDDcd116601.21E-15118167No hitNo description
Gene3DG3DSA:1.10.10.604.0E-9119167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
LEDTSNSAFA DHESEAEQVH LYHERGDYIV VPSSLDLIPV QYGWGGHQGR RKCRKRRKSC  60
WANAESNSKV QYGWGGHHGR RKYRKKSTSC WGEISNLFDL LKPSACRGKT FGGRKKIKRW  120
TSLEVENLVI GVSKLGVRNW TKVKRDYFKT SFRTQVNLKD KWRDLLRACG IDVASKKKVQ  180
PQRATRKIVQ GLLEEKIISI HYATQNRRTP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235266.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5S7K21e-154A0A1Z5S7K2_SORBI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-10TRF-like 3