![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G165700.1.p | ||||||||
Common Name | Sb01g014480, SORBIDRAFT_01g014480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 541aa MW: 61336.4 Da PI: 8.0972 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 260 | 330 | 16 | 87 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 l + +++a++h + +sk +tle+ ++++W k+ r s+ y+l + W +Fv++n+++egD++++ +++ Sobic.001G165700.1.p 260 LGITRDYASAHFPD--GSKHVTLETpGKSKKWHPKFYRRDESRNYMLIGQWLDFVRDNHVQEGDICLLVPTKD 330 66889999999633..7789*****5566*******55667777**********************9985543 PP | |||||||
2 | B3 | 45.2 | 1.6e-14 | 480 | 537 | 42 | 99 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 g++W+ k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk Sobic.001G165700.1.p 480 GGKTWKAKMMFHNGRRW-FLNGGWPNFARGNGLRVGDICLFELKKKeSKLTMAVHIIRK 537 68*******98888877.6999**********************888*********998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 6.42E-9 | 24 | 80 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.8E-8 | 31 | 81 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 32 | 77 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 2.3E-16 | 236 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-16 | 238 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-16 | 243 | 341 | No hit | No description |
SMART | SM01019 | 0.0014 | 244 | 344 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.869 | 245 | 344 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-9 | 260 | 330 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-19 | 432 | 537 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-17 | 433 | 537 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-17 | 438 | 536 | No hit | No description |
SMART | SM01019 | 0.0012 | 440 | 538 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-12 | 480 | 537 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 481 | 538 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 541 aa Download sequence Send to blast |
MDAIRVRAIR ILLKCYRFLR SMLPLLANNI VCEVCGDIGF RQLLLCCRDC KRYAVHQYCL 60 DKVVFDASLI EWFCYECQQR RGEVTCIRSL EQVSSEGPLS HGQFGTLVHQ LTTKRVESVR 120 DAGPYSPNGG CDELFSCPGI ENIPRVRERS VDPINISRIS EHDTTQASAS SERSTECQTA 180 SSCRREKTAK MAMASSSSEE SGEDILSEKE FLEYVLAYRC YLSKAQKKRV MELIQEIQPE 240 FTIFISIMRR GNVQPPGPFL GITRDYASAH FPDGSKHVTL ETPGKSKKWH PKFYRRDESR 300 NYMLIGQWLD FVRDNHVQEG DICLLVPTKD EIRCTFMVYV LHEATHSRGG AGFQMGGPFP 360 GASSAHMASE IHIEEEPIAG EHVSSESDMQ EIPHEPLEGG DSDDQFVPPY IVPCKSPLSK 420 SQKRIVEERV RAIRSEIPIC VAVMKNNNVG VAQRWMLELG SRYGSVYLPT KGQNIWLQCG 480 GKTWKAKMMF HNGRRWFLNG GWPNFARGNG LRVGDICLFE LKKKESKLTM AVHIIRKEKF 540 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.5532 | 0.0 | pollen |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G165700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466812.1 | 0.0 | B3 domain-containing protein Os03g0619800 | ||||
TrEMBL | C5WS93 | 0.0 | C5WS93_SORBI; Uncharacterized protein | ||||
STRING | Sb01g014480.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 | Representative plant | OGRP15367 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31650.1 | 4e-06 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G165700.1.p |
Entrez Gene | 8062504 |