PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165700.1.p
Common NameSb01g014480, SORBIDRAFT_01g014480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 541aa    MW: 61336.4 Da    PI: 8.0972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-112603301687
                           EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           l + +++a++h  +  +sk +tle+  ++++W  k+  r  s+ y+l + W +Fv++n+++egD++++  +++
  Sobic.001G165700.1.p 260 LGITRDYASAHFPD--GSKHVTLETpGKSKKWHPKFYRRDESRNYMLIGQWLDFVRDNHVQEGDICLLVPTKD 330
                           66889999999633..7789*****5566*******55667777**********************9985543 PP
2B345.21.6e-144805374299
                           TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            g++W+ k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk
  Sobic.001G165700.1.p 480 GGKTWKAKMMFHNGRRW-FLNGGWPNFARGNGLRVGDICLFELKKKeSKLTMAVHIIRK 537
                           68*******98888877.6999**********************888*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.42E-92480IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-83181IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135903277IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.102.3E-16236341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-16238338IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-16243341No hitNo description
SMARTSM010190.0014244344IPR003340B3 DNA binding domain
PROSITE profilePS508639.869245344IPR003340B3 DNA binding domain
PfamPF023623.6E-9260330IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-19432537IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-17433537IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-17438536No hitNo description
SMARTSM010190.0012440538IPR003340B3 DNA binding domain
PfamPF023622.3E-12480537IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407481538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDAIRVRAIR ILLKCYRFLR SMLPLLANNI VCEVCGDIGF RQLLLCCRDC KRYAVHQYCL  60
DKVVFDASLI EWFCYECQQR RGEVTCIRSL EQVSSEGPLS HGQFGTLVHQ LTTKRVESVR  120
DAGPYSPNGG CDELFSCPGI ENIPRVRERS VDPINISRIS EHDTTQASAS SERSTECQTA  180
SSCRREKTAK MAMASSSSEE SGEDILSEKE FLEYVLAYRC YLSKAQKKRV MELIQEIQPE  240
FTIFISIMRR GNVQPPGPFL GITRDYASAH FPDGSKHVTL ETPGKSKKWH PKFYRRDESR  300
NYMLIGQWLD FVRDNHVQEG DICLLVPTKD EIRCTFMVYV LHEATHSRGG AGFQMGGPFP  360
GASSAHMASE IHIEEEPIAG EHVSSESDMQ EIPHEPLEGG DSDDQFVPPY IVPCKSPLSK  420
SQKRIVEERV RAIRSEIPIC VAVMKNNNVG VAQRWMLELG SRYGSVYLPT KGQNIWLQCG  480
GKTWKAKMMF HNGRRWFLNG GWPNFARGNG LRVGDICLFE LKKKESKLTM AVHIIRKEKF  540
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.55320.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466812.10.0B3 domain-containing protein Os03g0619800
TrEMBLC5WS930.0C5WS93_SORBI; Uncharacterized protein
STRINGSb01g014480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1536734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.14e-06B3 family protein