PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_71541.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 55aa    MW: 6200.27 Da    PI: 11.1664
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_71541.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA50.85.3e-161446134
                CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeks 34
                             +ep+YVNaKQy++Il+RR++Rak+e e+k  +++
  Rsa1.0_71541.1_g00001.1 14 QEPVYVNAKQYKGILRRRKARAKAELERKA-TNG 46
                             79***************************8.443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005210.00711254IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.6951355IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.5E-121544IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601838IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MPGERTALPL DVTQEPVYVN AKQYKGILRR RKARAKAELE RKATNGKVGN LKHVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876771e-35KC787677.1 Brassica napus transcription factor subunit NF-YA1A (NF-YA1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625409.12e-21PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_013625410.12e-21PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ9LXV56e-20NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0D3B0V32e-21A0A0D3B0V3_BRAOL; Uncharacterized protein
STRINGBra006165.1-P4e-20(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-10nuclear factor Y, subunit A1