PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_61763.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 117aa    MW: 13241.2 Da    PI: 10.6219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_61763.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-0858103555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Rsa1.0_61763.1_g00001.1  58 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 103
                              578889******************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1151112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.72853102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1156111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-658103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-859108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-575106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
SSYHCNTHTH TQFPNPNLDF LPEASVSPHE FRVRDFPLVF KAGLGDQDGA KKPKLSSQSM  60
AARERRRRIA EKTHELTKLI PGGQKLNTAE MFQAAAKYVK FLQSQVGILQ MMQTTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_61763.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896551e-129AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475518.11e-81PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD07e-46BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A3P6A9N91e-60A0A3P6A9N9_BRAOL; Uncharacterized protein
STRINGBo3g028090.12e-61(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]