PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_60970.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 102aa    MW: 11662.2 Da    PI: 5.0615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_60970.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-091353954
                             HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              r RR+ri +++  L++++P  a      K++ +++L +A+ Y+k L
  Rsa1.0_60970.1_g00001.1 13 ARERRHRISDRLKILQSMVPGgA------KMDTVSMLNEAISYVKFL 53
                             699*****************966......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-121057No hitNo description
SMARTSM003533.0E-111059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-111057IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-71353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
VSTLSTDPQS VAARERRHRI SDRLKILQSM VPGGAKMDTV SMLNEAISYV KFLKAQIWFH  60
HNMLLFFNDY ETTTPCSYSP AGVSEFEPRL FDDDDDYTSI PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409351e-127AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720171.11e-62PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0412e-50BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0D3AHE55e-63A0A0D3AHE5_BRAOL; Uncharacterized protein
STRINGBra028895.1-P4e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-51APRATAXIN-like