PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_47639.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 122aa    MW: 13771.7 Da    PI: 10.0176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_47639.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-093781655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +++ r RR+ri ++ +eL +l+P a     +Kl+ ae+ e A +Y+k Lq
  Rsa1.0_47639.1_g00001.1 37 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 81
                             677899******************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-112392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4173180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1134100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-73786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-63781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
SIFPNFQVPD FPLEFKVGRG DEDRGHDTKK PSLSSQSIAA RERRRRIADK THELTKLIPG  60
AQKLNTAEMF EAAAKYVKFL QSQVGILQMM QTTTKTHISD VEIKTRVLLG SQAIQEKLST  120
DE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143737.17e-63PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD09e-46BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078JNX83e-63A0A078JNX8_BRANA; BnaAnng24240D protein (Fragment)
TrEMBLM4CMF17e-63M4CMF1_BRARP; Uncharacterized protein
STRINGBra005389.1-P2e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-46bHLH family protein