PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_47639.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 122aa    MW: 13771.7 Da    PI: 10.0176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_47639.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-093781655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +++ r RR+ri ++ +eL +l+P a     +Kl+ ae+ e A +Y+k Lq
  Rsa1.0_47639.1_g00001.1 37 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 81
                             677899******************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-112392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4173180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1134100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-73786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-63781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
SIFPNFQVPD FPLEFKVGRG DEDRGHDTKK PSLSSQSIAA RERRRRIADK THELTKLIPG  60
AQKLNTAEMF EAAAKYVKFL QSQVGILQMM QTTTKTHISD VEIKTRVLLG SQAIQEKLST  120
DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_47639.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466572.11e-69PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-44BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078JNX81e-61A0A078JNX8_BRANA; BnaAnng24240D protein (Fragment)
TrEMBLA0A397ZC293e-61A0A397ZC29_BRACM; Uncharacterized protein
TrEMBLM4CMF13e-61M4CMF1_BRARP; Uncharacterized protein
STRINGBra005389.1-P5e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]